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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_69856161_69857421_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69856161 - 69857421
Intron Length:
1261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCTTA
5'SS Class:
strong_major
3'SS Sequence:
ACTCTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ATTTGTTTCACT
Flanking Amino Acid:
KLKLYALFKQATEGPCNSPK
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1
75
38.1
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
83.8
0.76
0.8
80.8
30.4
Minor 5ss
46
-0.4
3.2
63.9
47.7
Minor BPS
57.5
0.32
2.2
81.74
40.3

Associated Gene:

Gene:
ECI2
Ensembl Gene ID:
ENSAPLG00000006010
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006257
69845939 - 69869268
23330
ENSAPLT00000036999
69844183 - 69869268
25086
ENSAPLT00000030024
69844183 - 69869176
24994
ENSAPLT00000028044
69848941 - 69869268
20328
ENSAPLT00000020536
69839060 - 69869268
30209