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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_69860597_69862007_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69860597 - 69862007
Intron Length:
1411

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAATAC
5'SS Class:
major
3'SS Sequence:
CTGTTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ATTTATTTACAT
Flanking Amino Acid:
KDDSTIAVITGNGEYYTSGN
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
65.6
35
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
82.5
0.73
0.8
77.2
31.6
Minor 5ss
36.5
-1.5
3.3
50
46.5
Minor BPS
54.2
0.21
1.9
76.56
39.8

Associated Gene:

Gene:
ECI2
Ensembl Gene ID:
ENSAPLG00000006010
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030024
69844183 - 69869176
24994
ENSAPLT00000028044
69848941 - 69869268
20328
ENSAPLT00000020536
69839060 - 69869268
30209
ENSAPLT00000006257
69845939 - 69869268
23330
ENSAPLT00000036999
69844183 - 69869268
25086