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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_69862111_69863561_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
69862111 - 69863561
Intron Length:
1451

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAATTGGA
5'SS Class:
major
3'SS Sequence:
TCCTTCTTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TCCTTCTTCATA
Flanking Amino Acid:
KMAKDGAVLLKEFVSSFIDF
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
68
37.3
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
79.6
0.67
0.7
75.6
26.6
Minor 5ss
33.8
-1.8
3.2
40.4
40
Minor BPS
57.5
0.23
1.7
65.77
41.9

Associated Gene:

Gene:
ECI2
Ensembl Gene ID:
ENSAPLG00000006010
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028044
69848941 - 69869268
20328
ENSAPLT00000020536
69839060 - 69869268
30209
ENSAPLT00000006257
69845939 - 69869268
23330
ENSAPLT00000036999
69844183 - 69869268
25086
ENSAPLT00000030024
69844183 - 69869176
24994