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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_69868198_69869020_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69868198 - 69869020
Intron Length:
823

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTCAGTACT
5'SS Class:
major
3'SS Sequence:
CTTTCTCCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
CTGCATTCAAAT
Flanking Amino Acid:
LKAYASLPKNSLAVSKQLLR
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.3
77.4
37.4
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
87.4
0.84
0.6
85.2
22.3
Minor 5ss
36.2
-1.6
2.8
49.4
39.2
Minor BPS
45.3
-0.2
1.8
59.92
43.2

Associated Gene:

Gene:
ECI2
Ensembl Gene ID:
ENSAPLG00000006010
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030024
69844183 - 69869176
24994
ENSAPLT00000028044
69848941 - 69869268
20328
ENSAPLT00000020536
69839060 - 69869268
30209
ENSAPLT00000006257
69845939 - 69869268
23330
ENSAPLT00000036999
69844183 - 69869268
25086