About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_69874873_69877479_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
69874873 - 69877479
Intron Length:
2607

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGATT
5'SS Class:
strong_major
3'SS Sequence:
AATTTTATTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATGTGTCAATT
Flanking Amino Acid:
HPAAMEISLDSEEDMYRDAE
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
87.7
28
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
76.8
0.6
0.9
71.5
38.5
Minor 5ss
32.8
-2
3.3
47.8
47.9
Minor BPS
46.6
-0.1
2.2
68.51
43

Associated Gene:

Gene:
OTULIN
Ensembl Gene ID:
ENSAPLG00000006391
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006620
69874224 - 69884919
10696