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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_69878478_69879669_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69878478 - 69879669
Intron Length:
1192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATAAGTT
5'SS Class:
major
3'SS Sequence:
TGTGTTTTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
GTTATTTGGATT
Flanking Amino Acid:
NTPVAKRMRKGYEAVAQKFA
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.7
0.37
1
67.7
35.5
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
77.1
0.61
0.9
72.4
37.8
Minor 5ss
43.5
-0.7
3.5
64
42
Minor BPS
49.8
0.06
1.4
68.33
36.7

Associated Gene:

Gene:
OTULIN
Ensembl Gene ID:
ENSAPLG00000006391
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006620
69874224 - 69884919
10696