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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_69879814_69881548_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69879814 - 69881548
Intron Length:
1735

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TGTCTACTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTGACTTAAACT
Flanking Amino Acid:
TWLQSEDFTKLPENLLSKYD
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.8
81.4
30.7
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
79.7
0.67
0.9
70.3
40.3
Minor 5ss
43.3
-0.7
3.1
60.6
44.5
Minor BPS
63.9
0.51
1.7
80.24
42

Associated Gene:

Gene:
OTULIN
Ensembl Gene ID:
ENSAPLG00000006391
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006620
69874224 - 69884919
10696