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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_69881675_69882979_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69881675 - 69882979
Intron Length:
1305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGAAAA
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTTT
U12 Branch Point Sequence:
TTTGTTTTTACA
Flanking Amino Acid:
KEYLMLLRKKWKYISEIKGP
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.2
69
37.3
Major BPS
32.2
-1.1
4.2
57.4
49.1
Major PPT
92.3
0.95
0.7
87.5
30
Minor 5ss
27.8
-2.6
2.9
31.4
42.4
Minor BPS
60.3
0.32
1.7
74.12
37.8

Associated Gene:

Gene:
OTULIN
Ensembl Gene ID:
ENSAPLG00000006391
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006620
69874224 - 69884919
10696