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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_69903546_69904175_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
69903546 - 69904175
Intron Length:
630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAATCTC
5'SS Class:
major
3'SS Sequence:
GTGCTACCGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TAATTTTTATTT
Flanking Amino Acid:
ITSLIVLPYLGVHGATLGVG
Intron Amino Acid Position:
422

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
69.5
41.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
60.7
0.24
1.1
54.6
40.6
Minor 5ss
37.7
-1.4
3.1
44.8
43.2
Minor BPS
59.6
0.38
1.5
73.17
38.2

Associated Gene:

Gene:
ANKH
Ensembl Gene ID:
ENSAPLG00000006461
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006732
69901902 - 70000333
98432