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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_69904300_69905149_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69904300 - 69905149
Intron Length:
850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAACA
5'SS Class:
strong_major
3'SS Sequence:
TGTTCATGAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGTTCATGAACA
Flanking Amino Acid:
LRIFSFFPVPVTVRAHLTGW
Intron Amino Acid Position:
381

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.8
31.6
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
67.2
0.39
1.1
62.7
42.3
Minor 5ss
33.1
-1.9
2.9
41.4
44.7
Minor BPS
66.4
0.51
1.7
79.01
36.4

Associated Gene:

Gene:
ANKH
Ensembl Gene ID:
ENSAPLG00000006461
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006732
69901902 - 70000333
98432