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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_69905280_69923243_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69905280 - 69923243
Intron Length:
17964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCTTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
CCTTTCTTAATT
Flanking Amino Acid:
TFVCMALSLTLCFVMFWTPN
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
75.5
34.4
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
75.8
0.58
0.7
68.8
31.6
Minor 5ss
34.3
-1.8
3
44.8
42.9
Minor BPS
76.9
0.92
1.2
82.74
39.5

Associated Gene:

Gene:
ANKH
Ensembl Gene ID:
ENSAPLG00000006461
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006732
69901902 - 70000333
98432