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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_69923340_69927145_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69923340 - 69927145
Intron Length:
3806

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCACCGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTTCTCTCACCG
Flanking Amino Acid:
IRAVYPAFDKNNPSNKLVNT
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
71.5
0.48
0.8
66.8
28
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
51.5
-0
1.9
64.73
43.1

Associated Gene:

Gene:
ANKH
Ensembl Gene ID:
ENSAPLG00000006461
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006732
69901902 - 70000333
98432