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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_69927239_69929867_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69927239 - 69929867
Intron Length:
2629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TAATTTTTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTCCTTGTAATT
Flanking Amino Acid:
DLGGSSSATEAVAILTATYP
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.88
0.8
76.8
33.7
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
77
0.61
0.8
72.9
36.9
Minor 5ss
27.4
-2.6
2.7
30.4
43
Minor BPS
50.6
0.1
2
71.97
40.1

Associated Gene:

Gene:
ANKH
Ensembl Gene ID:
ENSAPLG00000006461
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006732
69901902 - 70000333
98432