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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_69930839_69933294_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69930839 - 69933294
Intron Length:
2456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCCT
5'SS Class:
major
3'SS Sequence:
GTTTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TAATCTTTTATT
Flanking Amino Acid:
CASISDVIAQVVFVAILLHS
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
68.9
41.6
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
86.2
0.81
0.8
80.6
37
Minor 5ss
33.5
-1.9
3.4
48.9
46.7
Minor BPS
64.2
0.53
1.6
77.68
39.1

Associated Gene:

Gene:
ANKH
Ensembl Gene ID:
ENSAPLG00000006461
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006732
69901902 - 70000333
98432