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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_69934582_69942043_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69934582 - 69942043
Intron Length:
7462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGTTA
5'SS Class:
strong_major
3'SS Sequence:
TGTATCTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTATTATTCATT
Flanking Amino Acid:
AVAAVFHTLIAYSDLGYYII
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
84.8
28.2
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
80
0.68
0.9
73.1
37.2
Minor 5ss
40.3
-1.1
3.3
55.3
48.9
Minor BPS
53.3
0.18
2
77.4
39.3

Associated Gene:

Gene:
ANKH
Ensembl Gene ID:
ENSAPLG00000006461
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006732
69901902 - 70000333
98432