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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_70049971_70050644_R

Intron Information:

Intron Rank:
135746
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
70049971 - 70050644
Intron Length:
674

Sequence Information:

Terminal Dinucleotides:
GT-AA
5'SS Sequence:
AAG|GTAAGCATG
5'SS Class:
strong_major
3'SS Sequence:
AGATTTATTTCAA|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TCTCCCTCCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
81.8
38.5
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
42
-0.4
3.2
63.4
46.4
Minor 5ss
43
-0.8
2.9
56.9
47.4
Minor BPS
51.8
0.14
2
73.49
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020424
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028504
70049394 - 70054673
5280