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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_70050416_70050668_F

Intron Information:

Intron Rank:
142173
Intron Class:
major
Intron Phase:
Intron Coordinates:
70050416 - 70050668
Intron Length:
253

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
ACATGCTTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.2
30.6
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
99
1.1
0.4
96
13.8
Minor 5ss
43.2
-0.8
2.9
55.3
48.9
Minor BPS
52.8
0.17
2.1
70.84
45.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026557
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039205
70049387 - 70050815
1429