About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_70062572_70063587_F

Intron Information:

Intron Rank:
126546
Intron Class:
major
Intron Phase:
Intron Coordinates:
70062572 - 70063587
Intron Length:
1016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAGGTATT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAC
U12 Branch Point Sequence:
AAGATCTGACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
83.8
34.5
Major BPS
72.6
0.56
0.9
63.1
35.8
Major PPT
98.2
1.08
0.5
92.3
26.6
Minor 5ss
42.7
-0.8
3.2
64
40.7
Minor BPS
45.3
-0.2
1.7
56.69
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018193
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022061
70062411 - 70100897
38487