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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_70092419_70093524_R

Intron Information:

Intron Rank:
141913
Intron Class:
major
Intron Phase:
Intron Coordinates:
70092419 - 70093524
Intron Length:
1106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGTAA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTGTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
AATATTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.73
1
71.9
36.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.3
0.73
0.9
75.8
38.2
Minor 5ss
35.6
-1.6
3.2
38
46.9
Minor BPS
52.2
0.15
1.5
67.55
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023662
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047759
70091706 - 70094506
2801