About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_70172593_70220397_F


Intron Information:

Intron Rank:
1

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
70172593 - 70220397

Intron Length:
47805

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AGG|GTGAGCCCC

5'SS Class:
major

3'SS Sequence:
TCTTTCTTTGCAG|G

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
CTCTCAC

U12 Branch Point Sequence:
TCCCTCTCACCC

Flanking Amino Acid:
AGNGKQYGSEGKGSSSISSD

Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
73.2
0.55
1.1
56.7
42.7

Major BPS
72.7
0.56
1
75
30.1

Major PPT
92.4
0.95
0.6
88.1
21.7

Minor 5ss
33.3
-1.9
3
35.1
41

Minor BPS
46.7
-0.2
1.8
55.1
43.3

Associated Gene:

Gene:
FBXL7

Ensembl Gene ID:

Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

70172556 - 70355428
182873