About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_70220488_70347217_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
70220488 - 70347217
Intron Length:
126730

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
GCTTACTGATCC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
76.2
39.9
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
89.2
0.88
0.7
81.2
36.5
Minor 5ss
42.5
-0.8
3.2
59.7
45.1
Minor BPS
48.6
-0.1
1.9
61.27
43.5

Associated Gene:

Gene:
FBXL7
Ensembl Gene ID:
ENSAPLG00000006921
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048014
70171227 - 70355428
184202
ENSAPLT00000042567
70172556 - 70355428
182873
ENSAPLT00000035490
70170150 - 70355355
185206
ENSAPLT00000023885
70142070 - 70355355
213286