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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_70392875_70399133_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
70392875 - 70399133
Intron Length:
6259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCTCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTAATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
CTTTTCTTAATT
Flanking Amino Acid:
MYGFMDLVCIGLIVHEGASV
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.9
77.7
33.5
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
84.6
0.78
0.8
82.2
33
Minor 5ss
44.1
-0.6
2.8
56.9
47.3
Minor BPS
83.2
1.12
1
91.07
32.9

Associated Gene:

Gene:
MARCHF11
Ensembl Gene ID:
ENSAPLG00000006967
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007226
70392552 - 70421556
29005