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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_70420818_70421164_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70420818 - 70421164
Intron Length:
347

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCGC
5'SS Class:
strong_major
3'SS Sequence:
GTTGCCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TATTTCTGAAAA
Flanking Amino Acid:
CKICFQGPEQGELLNPCRCD
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
63.9
42.4
Major BPS
83
0.82
0.8
82
24.9
Major PPT
81
0.7
0.9
77.2
37
Minor 5ss
25.7
-2.8
3.1
32.8
42.2
Minor BPS
65.4
0.48
1.5
74.86
35.7

Associated Gene:

Gene:
MARCHF11
Ensembl Gene ID:
ENSAPLG00000006967
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007226
70392552 - 70421556
29005