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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_70472855_70473787_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
70472855 - 70473787
Intron Length:
933

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCATG
5'SS Class:
strong_major
3'SS Sequence:
CTCCTCTGAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
CTCCTCTGAACA
Flanking Amino Acid:
DDTMELILPSGARVGHRSLM
Intron Amino Acid Position:
426

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.7
44.5
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
68.5
0.42
1
64.7
35.2
Minor 5ss
41.6
-0.9
3.2
56.4
48
Minor BPS
58.4
0.26
1.5
65.1
41.3

Associated Gene:

Gene:
ZNF622
Ensembl Gene ID:
ENSAPLG00000006976
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007248
70471986 - 70478712
6727