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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_70473901_70474331_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
70473901 - 70474331
Intron Length:
431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGGACA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAA
U12 Branch Point Sequence:
AAAACGTGCACT
Flanking Amino Acid:
ALEFADFYDFRSSYPDHKEG
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.8
77.5
32.3
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
81
0.7
0.7
73.9
31.2
Minor 5ss
27.1
-2.6
2.9
31.6
42.4
Minor BPS
40.6
-0.6
2.4
58.52
43.7

Associated Gene:

Gene:
ZNF622
Ensembl Gene ID:
ENSAPLG00000006976
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007248
70471986 - 70478712
6727