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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_70474495_70475258_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
70474495 - 70475258
Intron Length:
764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGCCTG
5'SS Class:
major
3'SS Sequence:
ATTTTATCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCAATTTTATCT
Flanking Amino Acid:
VDLRGLIKYLGEKIGVGKIC
Intron Amino Acid Position:
334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
56.2
48.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84.4
0.77
0.8
78.7
34.2
Minor 5ss
47.1
-0.3
2.8
56.4
47.8
Minor BPS
53.7
0.2
1.6
68.62
42.6

Associated Gene:

Gene:
ZNF622
Ensembl Gene ID:
ENSAPLG00000006976
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007248
70471986 - 70478712
6727