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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_70478184_70478576_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
70478184 - 70478576
Intron Length:
393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGGGAGCC
5'SS Class:
major
3'SS Sequence:
CCCCGCTTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ACTTATTTATTC
Flanking Amino Acid:
LGKEGVSPGPAMATYTCITC
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1
55.7
35.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
69.7
0.44
0.8
60.6
35.3
Minor 5ss
25
-2.9
3.4
29.9
37.2
Minor BPS
50.5
-0
1.7
61.1
38.9

Associated Gene:

Gene:
ZNF622
Ensembl Gene ID:
ENSAPLG00000006976
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007248
70471986 - 70478712
6727