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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_70482691_70482822_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
70482691 - 70482822
Intron Length:
132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGACCAAA
5'SS Class:
weak_major
3'SS Sequence:
AGTTTGAGTGAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCGCAT
U12 Branch Point Sequence:
TTCGCATGCAGT
Flanking Amino Acid:
STAGLSLPLTKTDTEEADDF
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.7
0.09
1.2
55.2
39.7
Major BPS
70
0.5
1.4
79.6
35.6
Major PPT
54.7
0.11
1.2
53.8
44.5
Minor 5ss
41
-1
2.9
53.6
44.6
Minor BPS
40.3
-0.6
2.3
61.41
48

Associated Gene:

Gene:
RETREG1
Ensembl Gene ID:
ENSAPLG00000007153
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017851
70482533 - 70494223
11691