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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_70483045_70485540_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
70483045 - 70485540
Intron Length:
2496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TCCTGTGTAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
CTTCTGTTAATC
Flanking Amino Acid:
GYSPQTDTSEDFDRPSDHEE
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
83.5
35.1
Major BPS
84.4
0.85
1
84
34.5
Major PPT
65.5
0.35
1
61.2
39
Minor 5ss
43.5
-0.7
2.6
60.2
44.3
Minor BPS
53.3
0.08
2.1
66.76
39.6

Associated Gene:

Gene:
RETREG1
Ensembl Gene ID:
ENSAPLG00000007153
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017851
70482533 - 70494223
11691
ENSAPLT00000007423
70482533 - 70492803
10271
ENSAPLT00000035259
70481184 - 70491659
10476
ENSAPLT00000025444
70482533 - 70542804
60272