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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_70485634_70485675_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
70485634 - 70485675
Intron Length:
42

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTATGTAGG
5'SS Class:
major
3'SS Sequence:
AAAGAGCTGTCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTGCCAA
U12 Branch Point Sequence:
TAGTCCTGCAGT
Flanking Amino Acid:
DVRMLCMGLLLSDTDVSEVS
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.9
0.4
1.1
60.1
44.2
Major BPS
53
0.07
1.4
64.5
42.8
Major PPT
49.7
-0
1.2
44
46.4
Minor 5ss
43.8
-0.7
2.6
56.5
42.2
Minor BPS
48.2
-0
2.2
69.89
46.6

Associated Gene:

Gene:
RETREG1
Ensembl Gene ID:
ENSAPLG00000007153
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007423
70482533 - 70492803
10271
ENSAPLT00000035259
70481184 - 70491659
10476
ENSAPLT00000025444
70482533 - 70542804
60272
ENSAPLT00000017851
70482533 - 70494223
11691