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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_70488933_70489605_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
70488933 - 70489605
Intron Length:
673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
ATTTTTATCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTCAATAAAT
Flanking Amino Acid:
IPGVVLSYVLLLCAFLCPFL
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.1
71
40.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.6
0.73
0.8
77.5
34.9
Minor 5ss
37.1
-1.5
2.8
43.2
43.8
Minor BPS
58.1
0.33
2
82.66
37.4

Associated Gene:

Gene:
RETREG1
Ensembl Gene ID:
ENSAPLG00000007153
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007423
70482533 - 70492803
10271
ENSAPLT00000035259
70481184 - 70491659
10476
ENSAPLT00000025444
70482533 - 70542804
60272
ENSAPLT00000017851
70482533 - 70494223
11691