Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_70489691_70491458_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

70489691 - 70491458

Intron Length:

1768

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGCACT

5'SS Class:

strong_major

3'SS Sequence:

ATGTCTTTGTCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

CCAATTTTAATG

Flanking Amino Acid:

SHFKEQNPGKFCLLVCSICT

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.3

0.97

0.8

84.4

33.5

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

73.9

0.54

73.6

41.2

Minor 5ss

-0.9

2.9

58.6

45.7

Minor BPS

50.2

-0.1

1.4

47.54

40.6

Associated Gene:

Gene:

RETREG1

Ensembl Gene ID:

ENSAPLG00000007153

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025444

70482533 - 70542804

60272

ENSAPLT00000017851

70482533 - 70494223

11691

ENSAPLT00000007423

70482533 - 70492803

10271

ENSAPLT00000035259

70481184 - 70491659

10476