About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_70491586_70494155_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
70491586 - 70494155
Intron Length:
2570

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGGGAGAT
5'SS Class:
major
3'SS Sequence:
TTGTTTTACTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAC
U12 Branch Point Sequence:
TTTGTTTTACTT
Flanking Amino Acid:
RGTEVTRAYSCWEVISSRQD
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1
63.9
36.2
Major BPS
68.8
0.47
1.2
63.4
44
Major PPT
77.1
0.61
0.9
77.9
35.6
Minor 5ss
25.4
-2.8
3.5
34
43.2
Minor BPS
59.5
0.38
1.7
78.3
39.3

Associated Gene:

Gene:
RETREG1
Ensembl Gene ID:
ENSAPLG00000007153
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017851
70482533 - 70494223
11691