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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_70491586_70527687_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
70491586 - 70527687
Intron Length:
36102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGTATA
5'SS Class:
major
3'SS Sequence:
TTGTTTTACTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAC
U12 Branch Point Sequence:
TTTGTTTTACTT
Flanking Amino Acid:
GAQLWRRITDNWEVISSRQD
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
80.8
33.6
Major BPS
68.8
0.47
1.2
63.4
44
Major PPT
77.1
0.61
0.9
77.9
35.6
Minor 5ss
39.6
-1.2
3.1
50.6
40.3
Minor BPS
59.5
0.38
1.7
78.3
39.3

Associated Gene:

Gene:
RETREG1
Ensembl Gene ID:
ENSAPLG00000007153
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025444
70482533 - 70542804
60272