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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_70529459_70542300_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
70529459 - 70542300
Intron Length:
12842

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGCGTGGG
5'SS Class:
major
3'SS Sequence:
CTTAACATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TTCTTCTTAACA
Flanking Amino Acid:
GGFVCANLLFWFVALTPWRV
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1
56
43.1
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
69.2
0.43
0.9
59.5
41.2
Minor 5ss
25.7
-2.8
3.1
28.3
38.6
Minor BPS
84.7
1.09
1
86.69
32.1

Associated Gene:

Gene:
RETREG1
Ensembl Gene ID:
ENSAPLG00000007153
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025444
70482533 - 70542804
60272