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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_70555088_70555464_R

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70555088 - 70555464
Intron Length:
377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCCTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTACTTTTAATT
Flanking Amino Acid:
GYGSTLFDVECKEGGFPQEL
Intron Amino Acid Position:
1962

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.7
83.1
30.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
84.3
0.77
0.7
77.9
31
Minor 5ss
29.6
-2.3
2.6
32.5
42.4
Minor BPS
71.5
0.75
1.1
81.64
33.7

Associated Gene:

Gene:
MYO10
Ensembl Gene ID:
ENSAPLG00000007175
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007486
70554498 - 70687557
133060