About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_70559070_70559677_R

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70559070 - 70559677
Intron Length:
608

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
GTTTCCTCATGT
Flanking Amino Acid:
TINSHTTAGEVVEKLIRGLA
Intron Amino Acid Position:
1725

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
78.1
0.63
0.9
79
34.3
Minor 5ss
29.7
-2.3
3
40.4
45.3
Minor BPS
52.9
0.17
2.1
77.14
45

Associated Gene:

Gene:
MYO10
Ensembl Gene ID:
ENSAPLG00000007175
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007486
70554498 - 70687557
133060