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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_70561879_70563605_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
70561879 - 70563605
Intron Length:
1727

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
TTTTTGTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTAAAT
U12 Branch Point Sequence:
TTTTTGTTCACA
Flanking Amino Acid:
PLPYGDINLNLLKDKGYTTL
Intron Amino Acid Position:
1556

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1.1
81.2
33.5
Major BPS
69.8
0.49
1.1
75.5
35.2
Major PPT
88
0.85
0.7
83.5
31.6
Minor 5ss
49
-0.1
2.8
77.2
37.5
Minor BPS
55.5
0.17
2.4
78.35
38.8

Associated Gene:

Gene:
MYO10
Ensembl Gene ID:
ENSAPLG00000007175
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007486
70554498 - 70687557
133060