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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_70567549_70569730_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
70567549 - 70569730
Intron Length:
2182

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTCATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTATTTTCATA
Flanking Amino Acid:
DSVCAADNPDRPNSFVIITA
Intron Amino Acid Position:
1349

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.8
77.9
38.6
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
83.8
0.76
0.7
80.2
31.8
Minor 5ss
33.6
-1.9
2.9
40.4
45.7
Minor BPS
55.6
0.17
1.7
70.89
36

Associated Gene:

Gene:
MYO10
Ensembl Gene ID:
ENSAPLG00000007175
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007486
70554498 - 70687557
133060