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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_70573603_70575695_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
70573603 - 70575695
Intron Length:
2093

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGTTTA
5'SS Class:
major
3'SS Sequence:
TTCTTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TAATGCTCAGTC
Flanking Amino Acid:
LKGSIDVRTAKEIVDNTGKE
Intron Amino Acid Position:
1267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
77.8
33.2
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
93.1
0.97
0.6
92
18.6
Minor 5ss
44.1
-0.6
3.1
57.4
41.7
Minor BPS
45.3
-0.3
2.1
56.89
41.7

Associated Gene:

Gene:
MYO10
Ensembl Gene ID:
ENSAPLG00000007175
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007486
70554498 - 70687557
133060