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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_70580015_70580337_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
70580015 - 70580337
Intron Length:
323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCAGTAT
5'SS Class:
major
3'SS Sequence:
CCCCCACTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
GATTTGCTAACT
Flanking Amino Acid:
EEERRKEEEERERQRQEAER
Intron Amino Acid Position:
830

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.3
0.43
1
65.2
36.8
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
69.2
0.43
0.8
65.5
29.1
Minor 5ss
31.2
-2.1
3.6
46
49.3
Minor BPS
49.3
0.03
2.3
74.44
41.9

Associated Gene:

Gene:
MYO10
Ensembl Gene ID:
ENSAPLG00000007175
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007486
70554498 - 70687557
133060