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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_705801_709412_F

Intron Information:

Intron Rank:
127039
Intron Class:
major
Intron Phase:
Intron Coordinates:
705801 - 709412
Intron Length:
3612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
GCTTTGTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTACCATGAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.1
26.6
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
83.3
0.75
0.9
80.2
37.3
Minor 5ss
33
-1.9
3.1
41.6
45
Minor BPS
59.8
0.39
1.8
82.76
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018479
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038820
705509 - 711094
5586