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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_70580548_70581594_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
70580548 - 70581594
Intron Length:
1047

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
TTTTTTTTTCCT
Flanking Amino Acid:
IRAHILGYTARKRYRKVLYY
Intron Amino Acid Position:
760

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
76.2
33.5
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
84.8
0.78
0.7
77
31.7
Minor 5ss
33.5
-1.9
3.2
44.3
43.6
Minor BPS
45.5
-0.2
3.6
82.93
38.6

Associated Gene:

Gene:
MYO10
Ensembl Gene ID:
ENSAPLG00000007175
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007486
70554498 - 70687557
133060