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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_70608933_70612102_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70608933 - 70612102
Intron Length:
3170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
ACCTGTATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAA
U12 Branch Point Sequence:
TTCTTTCCACCT
Flanking Amino Acid:
RKPTVSLQFKESLHSLMATL
Intron Amino Acid Position:
618

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1.1
85.2
27
Major BPS
72.1
0.55
1.2
63.4
44.3
Major PPT
69.8
0.45
0.9
66.5
38.9
Minor 5ss
38.2
-1.3
2.8
50
46.3
Minor BPS
45.1
-0.2
2
67.83
43.5

Associated Gene:

Gene:
MYO10
Ensembl Gene ID:
ENSAPLG00000007175
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007486
70554498 - 70687557
133060