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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_70612212_70613554_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
70612212 - 70613554
Intron Length:
1343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATTTC
5'SS Class:
major
3'SS Sequence:
CTTTCTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATACTTTAAAG
Flanking Amino Acid:
DDLLNLLRESSLDFIYDLFE
Intron Amino Acid Position:
581

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
75.8
34.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86.2
0.81
0.8
84.1
30.8
Minor 5ss
43
-0.8
3.2
61.2
43.7
Minor BPS
64.6
0.32
1.5
66.89
40.3

Associated Gene:

Gene:
MYO10
Ensembl Gene ID:
ENSAPLG00000007175
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007486
70554498 - 70687557
133060