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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_70616372_70616608_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
70616372 - 70616608
Intron Length:
237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTCCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAA
U12 Branch Point Sequence:
CTCTCCTTATTT
Flanking Amino Acid:
IFSLEQLEYSREGLVWEDID
Intron Amino Acid Position:
477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
86
30.3
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
81.5
0.71
0.7
81.7
30
Minor 5ss
35.2
-1.7
3.8
55
49.2
Minor BPS
67.7
0.63
1.6
79.24
43.6

Associated Gene:

Gene:
MYO10
Ensembl Gene ID:
ENSAPLG00000007175
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007486
70554498 - 70687557
133060