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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_70616710_70616884_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70616710 - 70616884
Intron Length:
175

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGATTTC
5'SS Class:
major
3'SS Sequence:
CTTCCCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CATTTTTTAAAA
Flanking Amino Acid:
LDIFGFENFEVNRFEQFNIN
Intron Amino Acid Position:
444

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
75.6
35.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.6
0.73
0.7
80.8
24.3
Minor 5ss
42.7
-0.8
3.2
60.6
44.5
Minor BPS
64.9
0.46
1.4
69.01
37.3

Associated Gene:

Gene:
MYO10
Ensembl Gene ID:
ENSAPLG00000007175
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007486
70554498 - 70687557
133060