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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_70617032_70617614_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70617032 - 70617614
Intron Length:
583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCCA
5'SS Class:
major
3'SS Sequence:
ATTTTCATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GTTATTTTCATT
Flanking Amino Acid:
EILTPLSIQQAIDSRDSMAM
Intron Amino Acid Position:
395

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.68
1
65.6
40
Major BPS
100
1.24
0.5
100
0
Major PPT
84.5
0.78
0.8
78.7
33.7
Minor 5ss
30.4
-2.2
3.3
39.6
45.9
Minor BPS
52.6
0.16
1.7
72.43
39.2

Associated Gene:

Gene:
MYO10
Ensembl Gene ID:
ENSAPLG00000007175
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007486
70554498 - 70687557
133060