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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_70617734_70618646_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
70617734 - 70618646
Intron Length:
913

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTTGCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TATTCAAGGACA
Flanking Amino Acid:
AGGAQVSFKTALGRSAELLG
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
71.5
40.2
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
81
0.7
0.9
76.2
37.8
Minor 5ss
27.4
-2.6
2.7
31.3
42.4
Minor BPS
47.7
-0.1
2
66.96
38.4

Associated Gene:

Gene:
MYO10
Ensembl Gene ID:
ENSAPLG00000007175
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007486
70554498 - 70687557
133060