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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_70618777_70621560_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70618777 - 70621560
Intron Length:
2784

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGAGTTGT
5'SS Class:
major
3'SS Sequence:
CGTGTCATTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
TTTTATTTAAGA
Flanking Amino Acid:
NDKDSFKEVITAMEVMQFSK
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1
69.6
37.2
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
72.9
0.51
1
62.5
43.1
Minor 5ss
39
-1.2
3
55.1
43.5
Minor BPS
66.9
0.53
1.8
80.03
36.1

Associated Gene:

Gene:
MYO10
Ensembl Gene ID:
ENSAPLG00000007175
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007486
70554498 - 70687557
133060